Brian, i wont mention this again as im sure you are tired of me saying this. but you laped in your piston to the cyliner with 600 grit (while cold). i believe that was how you did your flame eater engine as well and you couldnt get it to run. what i found was do not lap the piston to the cylinder. rather heat the cylinder up and then measure / cut your piston to fit the cylinder when its hot. reason is that the piston is to small once the cylinder heats up and doesnt have enough sealing power to get the suction it needs because the cylinder expands more than the piston does. once you do this, with the piston in the cylinder hot it should be able to move, once the cylinder cools down the piston will be siezed up and wont budge. thats how it works for mine. the little engine in my avatar photo is the one im talking about (built from your plans). graphite piston, ss cylinder. and when i say heat it up -i mean by the denatured alcohol (also called methalated spirits) burner that you will be using to run it on.
once you have the piston where it will move freely hot but seized up when cold then hopefully it will run for you