First, what parts had the tight fit that needed pressing together? At this point the only crankshaft related parts that should be stuck together are the crankshaft itself and the gear to the flywheel. The crankshaft assembly should be able to slide out to the left fairly easily (looking at the rear of the engine in your pic). The ignition cam should be a sliding fit, it is held in place with a setscrew later when it's timing is set.
Second, carefully read this from the plans and get your head wrapped around it before you drill for pins:
"Exhaust valve timing is set by rotating the crankshaft
counter-clockwise (as viewed from the cam side) until it is about 15 - 30 before
it's outward most stroke. It is then held in place while the flywheel is rotated C.C. until
the cam just starts to lift the exhaust valve off of it's seat. Clamp, lock, & secure everything
in place and drill the two roll pin holes as shown on the next sheet. If set properly, the
exhaust valve will close a few degrees before TDC."
Good luck - the timing will eventually make sense.
Also, maybe mark you gears with some white paint dots so you know where they need to be rotated when reassembling things, that will save a bit of frustration.
-Starting to look like an engine!