Hi Dick,
Congrats on getting the engine finished and running. I suspect that feeding the log type manifold from one end is causing the problems with flooding on the near cylinders and running lean at the other end. I would think that dual carbs placed mid engine on 2 separate intake manifolds would help out greatly. Another thing to consider is the size of the intake manifold. If it's made too big it will be hard for the gas to be drawn to the far ends. A smaller diameter will keep the velocity in the runner up.
On automobile engines the intake was designed as a dual plane setup for that very reason. High performance manifolds were made as single plane type but the engines were made to run at higher rpm's.
gbritnell