You are doing it the hard way. just use your import as a template. Extrude a circle, then make a single tooth (either the female part or the male part, it doesn't matter), extrude THAT, then use the circular pattern command. Make it simple. At least that is the way I would do it.
That's pretty much the way I do it. I'll model a single tooth (It doesn't have to be fancy, but the geometry is pretty simple as are the tooth calculations.) & as Richard says, make a circular pattern of that tooth profile.
When you try to import all those segments from "Imported geometry", you may end up with an "unconnected" sketch (I don't know what it's called in different softwares), but, I know in my experience, I've spent a lot of time trying to close up & fix a sketch like that.
In Pro-E, I can "toggle" a sketch to show the interior sketch as shaded, or "filled", if it is indeed a closed sketch & usually don't have any problems. Does Alibre have something like that? Gordon also mentioned problems with the extrude direction not being able to predict the direction: Does Alibre have any kind of "Preview" feature that shows you the extrude before exiting the command?
I've usually had pretty good luck with the Rush Gear STP files, but I usually modify them exactly as Jason mentioned, but...I find it's just as easy to create the single tooth & pattern that. You can then take that a step farther & save a sketch (As its own "sketch" file, properly dimensioned & (ahem) Constrained, & use that tooth profile in any gear design). A caveat with that method may be regeneration times & file sizes, but depending (again) on your software, you may be able to "group" or "merge" all the teeth together or even save out your gear file as a STP file, import it back in, & then save that as your model file, it will then come in as one imported solid feature & not have to regenerate all the tooth profiles. If you're not happy with that gear, you can go back to you original gear part file (You didn't delete that right?) & make your modifications & then export it again as a STP. this method seems to work pretty well with model files that have a lot of patterns & complexity.
I hope this makes sense & helps.
You're doing just fine Gordon. Keep at it.
John